YU Xiong-xiang, SHEN Liang-zhong, SHANG Xue-qun, et al. Study on the Generalization of Boolean Functions in Critical Boolean Networks[J]. Acta Electronica Sinica, 2015, 43(10): 2076-2081.
DOI:
YU Xiong-xiang, SHEN Liang-zhong, SHANG Xue-qun, et al. Study on the Generalization of Boolean Functions in Critical Boolean Networks[J]. Acta Electronica Sinica, 2015, 43(10): 2076-2081. DOI: 10.3969/j.issn.0372-2112.2015.10.029.
Study on the Generalization of Boolean Functions in Critical Boolean Networks
Boolean network has been a major model to study gene regulatory networks.Lots of work have been focused on inferring networks from time-series data and designing potential intervention policies.However
one important problem still remains unsolved
that is the generalization of Boolean function.In general
the inference algorithms always assume a random Boolean value for the unobserved states.As many theoretical and experimental results support that gene regulatory networks lie between the boundary of ordered and disordered regimes
we studied three generalization methods:the majority rule
bias-based and mutual information-based methods.Results both on simulation networks and melanoma network show that reasonable generalization can improve both the steady-state distribution distance and the sensitivity error.And among the three methods
the mutual information-based method performs better than the other two.