[1] 朱泽轩,张永朋,等.高通量DNA测序数据压缩研究进展[J].深圳大学学报理工版,2013,30(4):409-415. Zhu Ze-xuan,Zhang Yong-peng,et al.Advance in the compression of high-throughput DNA sequencing data[J].Journal of Shenzhen University Science and Engineering,2013,30(4):409-415.(in Chinese)
[2] 纪震,周家锐,等.DNA序列数据压缩技术综述[J].电子学报,2010,38(5):1113-1121. Ji Zhen,Zhou Jia-rui,et al.Overview of DNA sequence data compression techniques[J].Acta Electronica Sinica,2010,38(5):1113-1121.(in Chinese)
[3] Korodi G,Tabus I.An efficient normalized maximum likelihood algorithm for DNA sequence compression[J].ACM Transactions on Information Systems,2005,23(1):3-34.
[4] Zhu Zexuan,Zhou Jiarui,et al.DNA sequence compression using adaptive particle swarm optimization-based memetic algorithm[J].IEEE Transactions on Evolutionary Computation,2011,15(5):643-658.
[5] 周家锐,纪震,等.基于Memetic优化的智能DNA序列数据压缩算法[J].电子学报,2013,41(3):513-518. Zhou Jia-rui,Ji Zhen,et al.Intelligent DNA sequence data compression using memetic algorithm[J].Acta Electronica Sinica,2013,41(3):513-518.(in Chinese)
[6] Kuruppu S,Puglisi S J,et al.Optimized relative Lempel-Ziv compression of genomes[A].Proceeding of the 34th Australasian Computer Science Conference[C].Australia:ACSC,2011.91-98.
[7] Wang Congmao,Zhang Dabing.A novel compression tool for efficient storage of genome resequencing data[J].Nucleic Acids Research,2011,39(7):E45-U74.
[8] Jones D,Ruzzo W,et al.Compression of next-generation sequencing reads aided by highly efficient de novo assembly[J].Nucleic Acids Research,2012,40(22):E171.
[9] Kuruppu S,Beresford-Smith B,et al.Iterative dictionary construction for compression of large DNA data sets[J].IEEE/ACM Transactions on Computational Biology and Bioinformatics,2012,9(1):137-149.
[10] Li Cong,Ji Zhenzhou,et al.Efficient parallel design for BWT-based DNA sequences data multicompression algorithm[A].Proceeding of International Conference on Automatic Control and Artificial Intelligence[C].Xiamen:ACAI,2012.967-970.
[11] Wikipedia.Move-to-front Transformation[DB/OL].http://en.wikipedia.org/wiki/Move-to-front-transform,2013-12-09.
[12] Wikipedia.FASTA[DB/OL].Http://blast.ncbi.nlm.nih.gov/blastcgihelp.shtml,2013-12-09.
[13] Shamir.Gil I.Universal lossless compression with unknown alphabets-the average case[J].IEEE Transactions on Information Theory,2006,52(11):4915-4944.
[14] Kuruppu S,Beresford-Smith B,et al.Iterative dictionary construction for compression of large DNA datasets:supplementary material[OL].http://www.computer.org/csdl/trans/tb/2012/01/ttb2012010137Abs.html,2013-12-09.
[15] 纪震,周家锐,等.基于生物信息学特征的DNA序列数据压缩算法[J].电子学报,2011,38(4):991-995. Ji Zhen,Zhou Jia-rui,et al.Bioinformatics features based DNA sequence data compression algorithm[J].Acta Electronica Sinica,2011,38(4):991-995.(in Chinese) |